Michaels
8/8/2007 10:19:00 AM
Actually, I think there may be an issue with the environment
variable. after I use export, nothing is added to /etc/environment.
Could this be it?
Thank you again for the help,
Michael
On Aug 7, 11:19 pm, Michaels <fixedincome...@gmail.com> wrote:
> I installed R from source. You are right on that file. I ran this
> export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib64/R
>
> I also added /usr/local/lib64/R/lib
> to ld.so.conf and ran ldconfig.
>
> Thank you for your help.
> Michael
>
> On Aug 7, 10:09 pm, Alex Gutteridge <al...@kuicr.kyoto-u.ac.jp> wrote:
>
> > On 8 Aug 2007, at 09:47, Michaels wrote:
>
> > > Hello,
> > > I was hoping someone here can help me with an install of Rsruby. I
> > > have it installed on one box but have been having trouble on my
> > > other. My R libraries are installed in /usr/local/lib64/R/
>
> > > the mkmf file is as follows. I think it is a linking issue that I
> > > thought would have been solved by export R_HOME=/usr/local/lib64/R/
> > > lib . Is there a way I should link the entire directory?
>
> > > Thank you for your time,
> > > Michael
>
> > > "gcc -o conftest -I. -I/usr/lib/ruby/1.8/x86_64-linux -I. -I/usr/
> > > share/
> > > R/include/ -I/usr
> > > /local/lib64/R/lib/include -Wall -g -fno-strict-aliasing -O2 -fPIC
> > > conftest.c -L"/usr
> > > /local/lib64/R/lib/lib" -L"/usr/lib" -rdynamic -Wl,-export-
> > > dynamic -lruby1.8-static
> > > -lR -lpthread -ldl -lcrypt -lm -lc"
> > > /usr/bin/ld: warning: libRblas.so, needed by /usr/lib/libR.so, not
> > > found (try using -rpath or -rpath-link)
> > > /usr/lib/libR.so: undefined reference to `dswap_'
> > > /usr/lib/libR.so: undefined reference to `dgemm_'
> > > /usr/lib/libR.so: undefined reference to `daxpy_'
> > > /usr/lib/libR.so: undefined reference to `drotg_'
> > > /usr/lib/libR.so: undefined reference to `dnrm2_'
> > > /usr/lib/libR.so: undefined reference to `dcopy_'
> > > /usr/lib/libR.so: undefined reference to `zgemm_'
> > > /usr/lib/libR.so: undefined reference to `dscal_'
> > > /usr/lib/libR.so: undefined reference to `ddot_'
> > > /usr/lib/libR.so: undefined reference to `dsyrk_'
> > > /usr/lib/libR.so: undefined reference to `dasum_'
> > > /usr/lib/libR.so: undefined reference to `dtrsm_'
> > > /usr/lib/libR.so: undefined reference to `drot_'
> > > collect2: ld returned 1 exit status
>
> > Hi,
>
> > What did you use to install R? From source or packages?
>
> > I assume you have libRblas.so in your /usr/local/lib64/R/lib
> > directory, so did you put /usr/local/lib64/R/lib into LD_LIBRARY_PATH
> > or ld.so.conf?
>
> > Alex Gutteridge
>
> > Bioinformatics Center
> > Kyoto University